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IBV

PKB-number: PKB106
Definition: Orf1a/orf1b (putative polymerase) ribosomal frameshift site of infectious bronchitis virus
Organism: infectious bronchitis virus
Abbreviation: IBV
RNA type: Viral Frameshift
Keywords: coronavirus; ribosomal frameshifting; polymerase
EMBL number: M27472
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Mutagenesis; Sequence comparison; Structure probing
References: [1] ten Dam E. et al. (1990). Virus Genes 4:121-136.
[2] Brierley I. et al. (1991). J. Mol. Biol. 220:889-902.
[3] Napthine S. et al. (1999). J. Mol. Biol. 288:305-320.
[4] Liphardt J. et al. (1999). J. Mol. Biol. 288:321-335.
Stem sizes:
Loop sizes:
11 7
1 0 32
Position Paired:
81-91; 100-110
93-99; 143-149
Bracket view of structure:
           70        80        90       100       110      140       150
     #    89|123456789|123456789|123456789|123456789|123=113 |123456789|
     $ 68 UUUAAACGGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUG.....AAGCGAGCCUU=150
     % 68 :::::::::::::(((((((((((:[[[[[[[))))))))))):::.....:::]]]]]]]:

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© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-6-22 PKB00106.html