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EAV

PKB-number: PKB127
Definition: ORF1a/ORF1b (polymerase) ribosomal frameshift site of equine arteritis virus
Organism: equine arteritis virus
Abbreviation: EAV
RNA type: Viral Frameshift
Keywords: arterivirus; robosomal frameshifting; polymerase
EMBL number: Y07862
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Mutagenesis; Sequence comparison
References: [1] den Boon J.A. et al. (1991). J. Virol. 65:2910-2920.
[2] den Boon J.A. (1996). Ph.D. Thesis, Leiden University.
Stem sizes:
Loop sizes:
11 6
2 1 69
Position Paired:
5412-5422; 5432-5442
5425-5430; 5512-5517
Bracket view of structure:
          5400      5410      5420      5430      5440         0      5520
     #      9|123456789|123456789|123456789|123456789|123=5443 |123456789|
     $ 5399 GUUAAACUGAGAGCGCCCCACAUCUUUCCCGGCGAUGUGGGGCGU......GCCCGGGACUU=5520
     % 5399 :::::::::::::(((((((((((::[[[[[[:))))))))))):......::]]]]]]:::

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© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-6-24 PKB00127.html