| PKB-number:
|
PKB168
|
| Definition:
|
tRNA-like structure 3'end
pseudoknot of RNA beta
|
| Organism:
|
lychnis ringspot virus
|
| Abbreviation:
|
LRSVbeta
|
| RNA type:
|
Viral tRNA-like
|
| Keywords:
|
hordeivirus;
RNA 3'end
|
| EMBL number:
|
Z46351
|
| Submitted by:
|
A.P.Gultyaev
(
A.P.Gultyaev@Biology.LeidenUniv.nl)
|
| Supported by:
|
Sequence comparison
|
| References:
|
[1] Solovyev A.G. et al. (1996). Virology 219:9-18.
|
Stem sizes:
Loop sizes:
|
13 5
3 2 34 |
| Position Paired:
|
2997-3004; 3050-3057
3009-3013; 3024-3028
3017-3021; 3092-3096
3034-3039; 3044-3049
3059-3068; 3074-3083 |
| Bracket view of structure:
|
3000 3010 3020 3030 3040 3050
# 6789|123456789|123456789|123456789|123456789|123456789|12345
$ 2996 AUUGGUGAUUAUUUCCGCUUACUCCUGUGCGGAUGCAACAAUGUUUUGACAUUGAUCACU=3055
% 2996 :((((((((::::(((((:::[[[[[::))))):::::((((((::::))))))))))))
3060 3070 3080 3090 3100
# 6789|123456789|123456789|123456789|123456789|
$ 3056 GAGUUUCAGACUGACUAACAGUCUGGGAUCCCCCAAGGGAGACCA=3100
% 3056 )):((((((((((:::::))))))))))::::::::]]]]]::::
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-12-23 PKB00168.html
