| PKB-number:
|
PKB217
|
| Definition:
|
ORF1a/ORF1b (polymerase) ribosomal frameshift site
|
| Organism:
|
lactate dehydrogenase-elevating virus, strain C
|
| Abbreviation:
|
LDV-C
|
| RNA type:
|
Viral Frameshift
|
| Keywords:
|
arterivirus;
ribosomal frameshifting;
polymerase
|
| EMBL number:
|
L13298
|
| Submitted by:
|
A.P. Gultyaev
(
gultyaev@rulsfb.LeidenUniv.nl)
|
| Supported by:
|
Sequence comparison
|
| References:
|
[1] Godeny E.K. et al. (1993). Virology 194:585-596.
|
Stem sizes:
Loop sizes:
|
11 6
3 3 19 |
| Position Paired:
|
6843-6853; 6866-6876
6857-6862; 6896-6901 |
| Bracket view of structure:
|
6830 6840 6850 6860 6870 6880
# |123456789|123456789|123456789|123456789|123456789|123456789
$ 6830 UUUAAACUGCUAGCCACCUCUGGUCUCGACCGCUGUACUAGAGGUGGGCUGACGGUGUYU=6889
% 6830 :::::::::::::(((((((((((:::[[[[[[:::))))))))))):::::::::::::
6890 6900
# |123456789|12
$ 6890 GGCGAUGCGGUCA=6902
% 6890 ::::::]]]]]]:
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2001-5-22 PKB00233.html
