PKB-number: |
PKB310
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Definition: |
Regulatory pseudoknot of the interferon-gamma gene 5'-UTR
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Organism: |
Canis familiaris (dog)
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Abbreviation: |
IFNG_PK_C_familiaris
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RNA type: |
mRNA
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Keywords: |
translation; PKR
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EMBL number: |
NW_876250
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Submitted by: |
A.P. Gultyaev
(a.p.gultyaev@biology.leidenuniv.nl)
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Supported by: |
Mutagenesis,Sequence comparison,Structure probing
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References: |
[1] Cohen-Chalamish S. et al. (2009). Nature Chem. Biol. 5:896-903.
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Comment: |
This pseudoknot can adopt alternative conformations, conserved in mammalian IFN-gamma mRNAÕs [1]. Here the numbering corresponds to the structure as given in [1] and differs from the database entry for genomic contig (NW_876250).
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Stem sizes: Loop sizes: |
6 33 0 2 6
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Position Paired: |
9 -14 ; 64 -69 15 -16 ; 117-118 18 -18 ; 116-116 20 -20 ; 114-114 21 -24 ; 109-112 25 -28 ; 104-107 32 -33 ; 100-101 35 -35 ; 98 -98 38 -42 ; 92 -96 44 -47 ; 87 -90 51 -53 ; 83 -85 56 -61 ; 76 -81
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