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drz_Ppac_1_1

PKB-number: PKB336
Definition: HDV-like ribozyme
Organism: Pristionchus pacificus
Abbreviation: drz_Ppac_1_1
RNA type: Ribozymes
Keywords: self-cleavage; hepatitis delta virus ribozyme; HDV-like ribozyme
EMBL number: BK006891
Submitted by: A.P. Gultyaev (a.p.gultyaev@biology.leidenuniv.nl)
Supported by: Sequence comparison,ribozyme activity
References: [1] Webb CH, Riccitelli NJ, Ruminski DJ & Luptak A (2009). Science 326:953.
Stem sizes:
Loop sizes:
7 8 3 2
2 0 1 4 0
Position Paired:
1  -7  ; 31 -37 
10 -16 ; 100-106
17 -17 ; 98 -98
18 -20 ; 28 -30
22 -23 ; 38 -39
41 -50 ; 83 -92
53 -56 ; 77 -80
59 -60 ; 73 -74
62 -62 ; 71 -71
64 -64 ; 69 -69
Bracket view of structure:
            10        20        30        40        50        60
#   123456789|123456789|123456789|123456789|123456789|123456789|
$ 1 GACUCGCUUGACUGUUCACCUCCCCGUGGUGCGAGUUGGACACCCACCACUCGCAUUCUU=60
% 1 (((((((::[[[[[[[[(((:[[::::))))))))))]]:((((((((((::((((::((

             70        80        90       100
#    123456789|123456789|123456789|123456789|123456
$ 61 CACCUAUUGUUUAAUUGUGCUUGUGGUGGGUGACUGAGAAACAGUC=106
% 61 :(:(::::):):))::))))::)))))))))):::::]:]]]]]]]


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© final design and maintenance: F.H.D.(Eke) van Batenburg; 2010-1-18 PKB00336.HTML