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PKV_ori

PKB-number: PKB364
Definition: 5\'-terminal ori region
Organism: Porcine Kobuvirus
Abbreviation: PKV_ori
RNA type: Viral 5 UTR
Keywords: Picornaviridae, IRES
EMBL number: EU787450
Submitted by: A.P. Gultyaev (a.p.gultyaev@biology.leidenuniv.nl)
Supported by: Sequence comparison
References: [1] Sweeney TR et al. (2012). J. Virol. 86:1468-1486.
Stem sizes:
Loop sizes:
8 4
4 1 45
Position Paired:
46 -53 ; 63 -70 
74 -78 ; 101-105
81 -83 ; 96 -98
85 -87 ; 92 -94
58 -61 ; 116-119
Bracket view of structure:
             50        60        70        80        90
#    123456789|123456789|123456789|123456789|123456789|
$ 41 UUUUCCGGUGGCCACCCGCCCGGGCCACCGUUACUCCACUCCACUCCUUC=90
% 41 :::::((((((((::::[[[[:)))))))):::(((((::(((:(((:::

            100       110       120
#    123456789|123456789|123456789|
$ 91 GGGACUGGUUUGGAGGAACAUAACAGGGCU=120
% 91 :))):)))::)))))::::::::::]]]]:


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© final design and maintenance: F.H.D.(Eke) van Batenburg; 2012-9-9 PKB00364.HTML