Intro
About PseudoBase Retrieve by Class Retrieve by Property Submit Pseudoknots

Retrieve PseudoKnots by class

PseudoBase is a collection of RNA pseudoknots that we make available for retrieval to the scientific community. If you used our database for your research, kindly mention this, referring to its publication (see Batenburg et al. (2000)).

On this page you can pick a pseudoknot by first selecting the appropriate class...

Viral ribosomal frameshifting signals
Viral ribosomal readthrough signals
Viral tRNA like structures
Other viral 5'-UTR
Other viral 3'-UTR
Viral others
rRNA

rRNA pseudoknot entries are representatives for many similar pseudoknots in diverse species. See the database of RNA families Rfam (http://rfam.sanger.ac.uk/), accessions RF00177; RF01960; RF01118. for all others.

mRNA
tmRNA

tmRNA pseudoknot entries are representatives for many similar pseudoknots in diverse species. See the database of RNA families Rfam (http://rfam.sanger.ac.uk/), accession RF00023.

Ribozymes

RNaseP RNA and HDV pseudoknot entries are representatives for many similar pseudoknots in diverse species. See the database of RNA families Rfam (http://rfam.sanger.ac.uk/), accessions RF00010; RF00094.

Aptamers
Artifical molecules
Others

The SRP and telomerase pseudoknot entries are representatives for many similar pseudoknots in diverse species. See the database of RNA families Rfam (http://rfam.sanger.ac.uk/), accessions RF00017; RF00024; RF00025.


Contact:
Prototyping: Jacky Ng & Jan Oliehoek.
© final design and maintenance: F.H.D.(Eke) van Batenburg, 1998-12-18;...; .