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Intro | |||
| About PseudoBase | Retrieve by Class | Retrieve by Property | Submit Pseudoknots | |
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| PKB# | Class | S1 | S2 | S+ | L1 | L2 | L3 | L+ | Name | Organism |
|---|---|---|---|---|---|---|---|---|---|---|
| 001 | Vf | 6 | 3 | - | 5 | 0 | 4 | - | BLV | Bovine leukemia virus |
| 002 | Vf | 5 | 4 | - | 2 | 0 | 6 | - | BWYV | Beet western yellows virus |
| 003 | Vf | 6 | 4 | - | 3 | 0 | 12 | - | EIAV | Equine infectious anemia virus |
| 004 | Vf | 5 | 6 | - | 2 | 0 | 11 | - | FIV | Feline immunodeficiency virus |
| 005 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | TYMV | turnip yellow mosaic virus |
| 006 | Vt | 3 | 6 | - | 3 | 0 | 3 | - | KYMV-BP | kennedya yellow mosaic virus |
| 007 | Vt | 3 | 6 | - | 2 | 0 | 3 | - | CaYMV | cacao yellow mosaic virus |
| 008 | Vt | 3 | 6 | - | 2 | 0 | 2 | - | PhyMV | physalis mottle virus |
| 009 | Vt | 3 | 6 | - | 3 | 0 | 3 | - | DYMV | desmodium yellow mottle virus |
| 010 | Vt | 3 | 6 | - | 3 | 0 | 2 | - | OYMV | ononis yellow mosaic virus |
| 011 | Vt | 3 | 6 | - | 3 | 0 | 3 | - | CYVV | clitoria yellow vein virus |
| 012 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | WCMV | wild cucumber mosaic virus |
| 013 | Vt | 3 | 6 | - | 3 | 0 | 3 | - | CaYVV | calopogonium yellow vein virus |
| 014 | Vt | 3 | 6 | - | 2 | 0 | 2 | - | APLV | andean potato latent virus |
| 015 | Vt | 3 | 6 | - | 2 | 0 | 3 | - | EMV | eggplant mosaic virus |
| 016 | Vt | 3 | 6 | - | 3 | 0 | 3 | - | OMV | okra mosaic virus |
| 017 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | CcTMV | tobacco mosaic virus |
| 018 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | TMV | tobacco mosaic virus |
| 019 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | PMMV-I | pepper mild mottle virus |
| 020 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | CGMMV | cucumber green mottle mosaic virus |
| 021 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | TMV-L | tobacco mosaic virus |
| 022 | Vt | 3 | 4 | - | 3 | 0 | 3 | - | STMV | satellite tobacco mosaic virus |
| 023 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | TMGMV | tobacco mild green mosaic virus |
| 024 | Vt | 3 | 4 | - | 3 | 0 | 3 | - | PaMMV | paprika mild mottle virus |
| 025 | Vt | 3 | 4 | - | 2 | 0 | 2 | - | TVCV | turnip vein-clearing virus |
| 026 | Vt | 3 | 4 | - | 2 | 0 | 2 | - | ORMV | oilseed rape mosaic virus |
| 027 | Vt | 3 | 4 | - | 3 | 0 | 2 | - | PMMV-S | pepper mild mottle virus |
| 028 | Vt | 3 | 4 | - | 2 | 0 | 2 | - | ORSV-S1 | odontoglossum ringspot virus |
| 029 | Vt | 3 | 4 | - | 2 | 0 | 2 | - | TMVcg | tobacco mosaic virus |
| 030 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | SBWMV1 | soil-borne wheat mosaic virus |
| 031 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | SBWMV2 | soil-borne wheat mosaic virus |
| 032 | Vt | 3 | 6 | - | 2 | 0 | 2 | - | PMTV2 | potato mop-top virus |
| 033 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | PCV1 | peanut clump virus |
| 034 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | PCV2 | peanut clump virus |
| 035 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | IPCV1 | Indian peanut clump virus |
| 036 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | BSBV1 | beet soil-borne virus |
| 037 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | BSBV2 | beet soil-borne virus |
| 038 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | BSBV3 | beet soil-borne virus |
| 039 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | BVQ1 | beet virus Q |
| 040 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | BVQ2 | beet virus Q |
| 041 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | BVQ3 | beet virus Q |
| 042 | Vf | 4 | 3 | - | 2 | 1 | 9 | - | PLRV-W | potato leafroll virus |
| 043 | Vf | 4 | 4 | - | 2 | 0 | 8 | - | PLRV-S | potato leafroll virus |
| 044 | Vf | 5 | 3 | - | 2 | 1 | 8 | - | CABYV | cucurbit aphid-borne yellows virus |
| 045 | Vf | 6 | 4 | - | 2 | 0 | 6 | - | PEMV | pea enation mosaic virus |
| 046 | Vf | 5 | 4 | - | 2 | 0 | 7 | - | BYDV-NY-RPV | barley yellow dwarf virus |
| 047 | Vr | 8 | 7 | - | 1 | 0 | 18 | - | Mo-MuLV | Moloney murine leukemia virus |
| 048 | Vr | 7 | 7 | - | 2 | 0 | 18 | - | SNV | spleen necrosis virus |
| 049 | Tm | 5 | 6 | - | 1 | 2 | 5 | - | Ec_PK1 | E.coli |
| 050 | Tm | 14 | 5 | - | 3 | 0 | 10 | - | Ec_PK2 | E.coli |
| 051 | Tm | 9 | 5 | - | 1 | 0 | 11 | - | Ec_PK3 | E.coli |
| 052 | Tm | 13 | 6 | - | 1 | 0 | 9 | - | Ec_PK4 | E.coli |
| 053 | V3 | 3 | 4 | - | 1 | 0 | 5 | - | TMV_UPD-PK1 | tobacco mosaic virus |
| 054 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | TMV_UPD-PK2 | tobacco mosaic virus |
| 055 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | TMV_UPD-PK3 | tobacco mosaic virus |
| 056 | V3 | 6 | 4 | - | 1 | 0 | 3 | - | ORSV-S1_UPD3-PK1 | odontoglossum ringspot virus |
| 057 | Vt | 7 | 4 | - | 4 | 34 | 7 | - | TMV_PKbulge | tobacco mosaic virus |
| 058 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | ORSV-S1_UPD1-PK3 | odontoglossum ringspot virus |
| 059 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | ORSV-S1_UPD1-PK2 | odontoglossum ringspot virus |
| 060 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | ORSV-S1_UPD2-PK3 | odontoglossum ringspot virus |
| 061 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | ORSV-S1_UPD2-PK2 | odontoglossum ringspot virus |
| 062 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | ORSV-S1_UPD3-PK3 | odontoglossum ringspot virus |
| 063 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | ORSV-S1_UPD3-PK2 | odontoglossum ringspot virus |
| 064 | Rr | 5 | 3 | - | 3 | 1 | 890 | - | Ec_16S-PKcentre | E.coli |
| 065 | Rr | 3 | 7 | - | 3 | 6 | 7 | - | Ec_16S-PK505/526 | E.coli |
| 066 | Ap | 3 | 5 | - | 2 | 4 | 7 | - | TPK-70.28 | - |
| 067 | Tm | 5 | 5 | - | 2 | 0 | 7 | - | Lp_PK1 | Legionella pneumophila |
| 068 | Tm | 10 | 7 | - | 1 | 10 | 12 | - | Lp_PK2 | Legionella pneumophila |
| 069 | Tm | 9 | 7 | - | 24 | 0 | 3 | - | Lp_PK3 | Legionella pneumophila |
| 070 | Tm | 11 | 6 | - | 1 | 0 | 11 | - | Lp_PK4 | Legionella pneumophila |
| 071 | Mr | 12 | 8 | x | 8 | 4 | 1 | x | Ec_alpha | E.coli |
| 072 | Mr | 10 | 7 | - | 1 | 0 | 31 | - | Ec_S15 | E.coli |
| 073 | Mr | 5 | 7 | - | 1 | 0 | 7 | - | T2_gene32 | T2 bacteriophage |
| 074 | Mr | 4 | 7 | - | 1 | 0 | 5 | - | T4_gene32 | bacteriophage T4 |
| 075 | Ri | 7 | 7 | x | 2 | 0 | 1 | x | HDV-It_g | hepatitis delta virus ("Italy" variant) |
| 076 | Ri | 7 | 4 | - | 8 | 13 | 41 | - | HDV-It_ag | hepatitis delta virus ("Italy" variant) |
| 077 | Ri | 7 | 6 | - | 158 | 2 | 28 | - | Tt-LSU_P3/P7 | Tetrahymena thermophila |
| 078 | Vr | 8 | 7 | - | 1 | 0 | 18 | - | AKV-MuLV | AKV murine leukemia virus |
| 079 | Vr | 8 | 7 | - | 2 | 0 | 17 | - | GaLV | gibbon ape leukemia virus |
| 080 | Vf | 5 | 7 | - | 1 | 1 | 8 | - | MMTV_gag/pro | mouse mammary tumor virus |
| 081 | Ar | 3 | 5 | - | 4 | 0 | 6 | - | oligo_PK5 | - |
| 082 | V3 | 3 | 4 | - | 3 | 0 | 6 | - | TMV-L_UPD-PK1 | tobacco mosaic virus |
| 083 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | TMV-L_UPD-PK2 | tobacco mosaic virus |
| 084 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | TMV-L_UPD-PK3 | tobacco mosaic virus |
| 085 | V3 | 3 | 6 | - | 2 | 0 | 2 | - | CcTMV_UPD-PK1 | tobacco mosaic virus |
| 086 | V3 | 3 | 5 | - | 1 | 0 | 3 | - | CcTMV_UPD-PK2 | tobacco mosaic virus |
| 087 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | CcTMV_UPD-PK3 | tobacco mosaic virus |
| 088 | Vr | 8 | 6 | - | 3 | 0 | 18 | - | FeLV | Feline leukemia virus |
| 089 | V3 | 8 | 4 | - | 2 | 0 | 5 | - | CGMMV_UPD-PK1 | cucumber green mottle mosaic virus |
| 090 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | CGMMV_UPD-PK2 | cucumber green mottle mosaic virus |
| 091 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | CGMMV_UPD-PK3 | cucumber green mottle mosaic virus |
| 092 | V3 | 5 | 5 | - | 1 | 0 | 4 | - | TMGMV_UPD-PK1 | tobacco mild green mosaic virus |
| 093 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | TMGMV_UPD-PK2 | tobacco mild green mosaic virus |
| 094 | V3 | 4 | 4 | - | 5 | 1 | 8 | - | TMGMV_UPD-PK3 | tobacco mild green mosaic virus |
| 095 | V3 | 3 | 4 | - | 1 | 0 | 6 | - | PMMV-S_UPD-PK1 | pepper mild mottle virus |
| 096 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | PMMV-S_UPD-PK2 | pepper mild mottle virus |
| 097 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | PMMV-S_UPD-PK3 | pepper mild mottle virus |
| 098 | Vr | 8 | 7 | - | 1 | 0 | 18 | - | BaEV | baboon endogenous virus |
| 099 | Vr | 8 | 7 | - | 1 | 0 | 18 | - | Cas-Br-E-MuLV | Cas-Br-E murine leukemia virus |
| 100 | V3 | 6 | 6 | - | 2 | 0 | 3 | - | STMV_UPD2-PK1 | satellite tobacco mosaic virus |
| 101 | V3 | 4 | 6 | - | 1 | 0 | 3 | - | STMV_UPD2-PK2 | satellite tobacco mosaic virus |
| 102 | V3 | 4 | 4 | - | 1 | 0 | 5 | - | STMV_UPD2-PK3 | satellite tobacco mosaic virus |
| 103 | V3 | 3 | 4 | - | 1 | 0 | 8 | - | STMV_UPD1-PK1 | satellite tobacco mosaic virus |
| 104 | V3 | 3 | 6 | - | 1 | 1 | 4 | - | STMV_UPD1-PK2 | satellite tobacco mosaic virus |
| 105 | V3 | 4 | 5 | - | 5 | 0 | 6 | - | STMV_UPD1-PK3 | satellite tobacco mosaic virus |
| 106 | Vf | 11 | 7 | - | 1 | 0 | 32 | - | IBV | infectious bronchitis virus |
| 107 | Vf | 6 | 6 | - | 1 | 0 | 12 | - | SRV1_gag/pro | simian retrovirus-1 |
| 108 | Ot | 4 | 8 | - | 3 | 0 | 4 | - | T.the_telo | Tetrahymena thermophila |
| 109 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BVQ1_UPD-PKc | beet virus Q |
| 110 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BVQ1_UPD-PKb | beet virus Q |
| 111 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BVQ2_UPD-PKc | beet virus Q |
| 112 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BVQ2_UPD-PKb | beet virus Q |
| 113 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BVQ3_UPD-PKc | beet virus Q |
| 114 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BVQ3_UPD-PKb | beet virus Q |
| 115 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BSBV1_UPD-PKc | beet soil-borne virus |
| 116 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BSBV1_UPD-PKb | beet soil-borne virus |
| 117 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BSBV2_UPD-PKc | beet soil-borne virus |
| 118 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BSBV2_UPD-PKb | beet soil-borne virus |
| 119 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | BSBV3_UPD-PKc | beet soil-borne virus |
| 120 | V3 | 6 | 6 | - | 1 | 0 | 9 | - | BSBV3_UPD-PKb | beet soil-borne virus |
| 121 | V3 | 3 | 5 | - | 2 | 0 | 6 | - | STNV1_PK1 | satellite tobacco necrosis virus 1 |
| 122 | V3 | 5 | 7 | - | 3 | 0 | 2 | - | STNV1_PK2 | satellite tobacco necrosis virus 1 |
| 123 | V3 | 4 | 6 | - | 2 | 0 | 2 | - | STNV1_PK3 | satellite tobacco necrosis virus 1 |
| 124 | V3 | 3 | 7 | - | 1 | 0 | 6 | - | STNV2_PK1 | satellite tobacco necrosis virus 2 |
| 125 | V3 | 3 | 6 | - | 2 | 0 | 3 | - | STNV2_PK2 | satellite tobacco necrosis virus 2 |
| 126 | V3 | 3 | 6 | - | 2 | 0 | 4 | - | STNV2_PK3 | satellite tobacco necrosis virus 2 |
| 127 | Vf | 11 | 6 | - | 2 | 1 | 69 | - | EAV | equine arteritis virus |
| 128 | Vf | 11 | 5 | - | 4 | 0 | 69 | - | BEV | Berne virus |
| 129 | Rr | 2 | 6 | - | 249 | 2 | 0 | - | Ec_16S-PK570/866 | E.coli |
| 130 | Vt | 3 | 5 | - | 3 | 0 | 3 | - | TRV-PSG | tobacco rattle virus |
| 131 | Ap | 5 | 6 | - | 2 | 0 | 24 | - | NGF-H1 | - |
| 132 | Ap | 5 | 5 | - | 2 | 0 | 27 | - | NGF-L2 | - |
| 133 | Ap | 5 | 6 | - | 2 | 0 | 24 | - | NGF-L6 | - |
| 134 | Vt | 13 | 6 | - | 2 | 0 | 31 | - | BMV3 | brome mosaic virus |
| 135 | Vt | 13 | 6 | - | 2 | 0 | 31 | - | BBMV3 | broad bean mottle virus |
| 136 | Vt | 13 | 6 | - | 2 | 0 | 27 | - | CCMV3 | cowpea chlorotic mottle virus |
| 137 | Vt | 13 | 5 | - | 2 | 1 | 28 | - | CMV3 | cucumber mosaic virus |
| 138 | Vt | 14 | 5 | - | 2 | 1 | 27 | - | BSMVbeta | barley stripe mosaic virus |
| 139 | Vt | 6 | 4 | - | 4 | 34 | 9 | - | TMV-L_PKbulge | tobacco mosaic virus |
| 140 | Vt | 8 | 4 | - | 4 | 32 | 7 | - | CGMMV_PKbulge | cucumber green mottle mosaic virus |
| 141 | Vt | 9 | 3 | - | 4 | 31 | 9 | - | TMGMV_PKbulge | tobacco mild green mosaic virus |
| 142 | Vt | 7 | 5 | - | 4 | 34 | 7 | - | STMV_PKbulge | satellite tobacco mosaic virus |
| 143 | Vt | 7 | 5 | - | 4 | 33 | 8 | - | PMMV-S_PKbulge | pepper mild mottle virus |
| 144 | Vt | 8 | 4 | - | 4 | 34 | 7 | - | ORSV-S1_PKbulge1 | odontoglossum ringspot virus |
| 145 | Vt | 5 | 6 | - | 2 | 23 | 9 | - | ORSV-S1_PKbulge2 | odontoglossum ringspot virus |
| 146 | Vt | 5 | 5 | - | 3 | 14 | 11 | - | ORSV-S1_PKbulge3 | odontoglossum ringspot virus |
| 147 | Rr | 10 | 8 | - | 3 | 0 | 7 | - | Sc_18S-PKE21-7/8 | Saccharomyces cerevisiae |
| 148 | Rr | 10 | 3 | - | 32 | 6 | 0 | - | Ec_23S-PKG12 | Escherichia coli |
| 149 | Ri | 7 | 8 | - | 47 | 261 | 10 | - | Ec_RNaseP-P4 | Escherichia coli |
| 150 | Ri | 4 | 4 | x | 3 | 157 | 23 | x | Ec_RNaseP-P6 | Escherichia coli |
| 151 | V3 | 4 | 7 | - | 4 | 0 | 3 | - | BSMVbeta_UPD-PK1 | barley stripe mosaic virus |
| 152 | V3 | 3 | 7 | - | 1 | 0 | 3 | - | BSMVbeta_UPD-PK2 | barley stripe mosaic virus |
| 153 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | BSMVbeta_UPD-PK3 | barley stripe mosaic virus |
| 154 | V3 | 5 | 5 | - | 1 | 0 | 2 | - | BMV3_UPD-PK1 | brome mosaic virus |
| 155 | V3 | 3 | 5 | - | 1 | 0 | 2 | - | BMV3_UPD-PK2 | brome mosaic virus |
| 156 | V3 | 3 | 4 | - | 1 | 0 | 6 | - | BMV3_UPD-PK3 | brome mosaic virus |
| 157 | V3 | 3 | 6 | - | 3 | 0 | 3 | - | BMV3_UPD-PK4 | brome mosaic virus |
| 158 | Vo | 4 | 5 | - | 5 | 0 | 3 | - | TRV-PSG2_PK1 | tobacco rattle virus, strain PSG |
| 159 | Vo | 3 | 5 | - | 1 | 1 | 4 | - | TRV-PSG2_PK2 | tobacco rattle virus, strain PSG |
| 160 | Vo | 5 | 5 | - | 3 | 0 | 7 | - | TRV-PSG2_PK3 | tobacco rattle virus, strain PSG |
| 161 | Vo | 3 | 6 | - | 1 | 0 | 3 | - | TRV-PSG2_PK4 | tobacco rattle virus, strain PSG |
| 162 | Vo | 6 | 5 | - | 1 | 0 | 10 | - | TRV-PSG2_PK5 | tobacco rattle virus, strain PSG |
| 163 | Ot | 6 | 4 | x | 1 | 1 | 5 | x | Hs_SRP-pkn | Homo sapiens |
| 164 | Vt | 14 | 5 | - | 2 | 1 | 26 | - | PSLVbeta | poa semilatent virus |
| 165 | V3 | 3 | 5 | - | 1 | 0 | 4 | - | PSLVbeta_UPD-PK1 | poa semilatent virus |
| 166 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | PSLVbeta_UPD-PK2 | poa semilatent virus |
| 167 | V3 | 4 | 8 | - | 2 | 0 | 6 | - | PSLVbeta_UPD-PK3 | poa semilatent virus |
| 168 | Vt | 13 | 5 | - | 3 | 2 | 34 | - | LRSVbeta | lychnis ringspot virus |
| 169 | V3 | 12 | 6 | x | 1 | 9 | 5 | x | CoxB3 | Coxsackie B virus |
| 170 | Mr | 18 | 10 | - | 9 | 1 | 75 | - | ColIb-P9_repZ | plasmid ColIb-P9 |
| 171 | Vf | 12 | 5 | x | 3 | 0 | 156 | x | HCV_229E | human coronavirus 229E |
| 172 | V3 | 6 | 6 | - | 9 | 0 | 3 | - | BaMV | bamboo mosaic virus |
| 173 | Ri | 4 | 5 | x | 1 | 2 | 8 | x | satRPV | Satellite cereal yellow dwarf virus-RPV RNA |
| 174 | Vf | 14 | 8 | - | 11 | 52 | 11 | - | RSV | Rous sarcoma virus |
| 175 | Ap | 5 | 7 | - | 1 | 0 | 30 | - | biotin-PK | - |
| 176 | Ap | 5 | 6 | - | 2 | 0 | 6 | - | biotin-PK-AN69.1 | - |
| 177 | Ot | 11 | 6 | - | 6 | 1 | 10 | - | Rr_ODCanti | Rattus rattus (black rat) |
| 178 | Ri | 4 | 3 | x | 3 | 0 | 50 | x | Ni_VS | Neurospora intermedia |
| 179 | Mr | 19 | 8 | - | 3 | 1 | 58 | - | pMU407_repBA | plasmid pMU407.1 (IncL/M) |
| 180 | Mr | 16 | 7 | - | 4 | 1 | 83 | - | pMU720_repBA | plasmid pMU720 (IncB) |
| 181 | V5 | 11 | 6 | - | 1 | 1 | 1 | - | HCV_IRES | hepatitis C virus |
| 182 | Vt | 3 | 5 | - | 4 | 0 | 3 | - | SBRMV1-PKa | soil-borne rye mosaic virus |
| 183 | V3 | 3 | 7 | - | 1 | 0 | 4 | - | SBRMV1-UPD-PKb | soil-borne rye mosaic virus |
| 184 | V3 | 5 | 6 | - | 1 | 0 | 6 | - | SBRMV1_UPD-PKc | soil-borne rye mosaic virus |
| 185 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | SBRMV1_UPD-PKd | soil-borne rye mosaic virus |
| 186 | V3 | 5 | 5 | - | 1 | 2 | 4 | - | SBRMV1_UPD-PKe | soil-borne rye mosaic virus |
| 187 | V3 | 4 | 4 | - | 3 | 0 | 6 | - | SBRMV1_UPD-PKf | soil-borne rye mosaic virus |
| 188 | V3 | 3 | 5 | - | 2 | 0 | 3 | - | SBRMV1_UPD-PKg | soil-borne rye mosaic virus |
| 189 | V3 | 4 | 7 | - | 1 | 0 | 3 | - | SBRMV1_UPD-PKh | soil-borne rye mosaic virus |
| 190 | Vo | 9 | 5 | - | 1 | 0 | 9 | - | PSIV_IRES | Plautia stali intestine virus |
| 191 | Vt | 16 | 4 | - | 3 | 0 | 61 | - | AMV3 | alfalfa mosaic virus |
| 192 | Vo | 8 | 9 | - | 1204 | 2 | 0 | - | Qbeta_PKldX | bacteriophage Q-beta |
| 193 | Mr | 18 | 6 | - | 4 | 0 | 261 | - | Ec_rpmI | Escherichia coli |
| 194 | V3 | 3 | 7 | - | 1 | 0 | 4 | - | SBWMV1_UPD-PKb | soil-borne wheat mosaic virus |
| 195 | V3 | 5 | 6 | - | 1 | 0 | 6 | - | SBWMV1_UPD-PKc | soil-borne wheat mosaic virus |
| 196 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | SBWMV1_UPD-PKd | soil-borne wheat mosaic virus |
| 197 | V3 | 4 | 5 | - | 1 | 2 | 5 | - | SBWMV1_UPD-PKe | soil-borne wheat mosaic virus |
| 198 | V3 | 4 | 5 | - | 2 | 0 | 9 | - | SBWMV1_UPD-PKf | soil-borne wheat mosaic virus |
| 199 | V3 | 3 | 5 | - | 2 | 0 | 3 | - | SBWMV1_UPD-PKg | soil-borne wheat mosaic virus |
| 200 | V3 | 4 | 7 | - | 1 | 0 | 3 | - | SBWMV1_UPD-PKh | soil-borne wheat mosaic virus |
| 201 | V3 | 3 | 7 | - | 1 | 0 | 5 | - | SBWMV2_UPD-PKb | soil-borne wheat mosaic virus |
| 202 | V3 | 4 | 7 | - | 3 | 0 | 7 | - | SBWMV2_UPD-PKi | soil-borne wheat mosaic virus |
| 203 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | SBWMV2_UPD-PKk | soil-borne wheat mosaic virus |
| 204 | V3 | 4 | 5 | - | 3 | 0 | 6 | - | SBWMV2_UPD-PKl | soil-borne wheat mosaic virus |
| 205 | Rr | 4 | 4 | - | 1 | 2 | 8 | - | Pp_18S-PKE23-9/12 | Palmaria palmata |
| 206 | Mr | 6 | 5 | - | 13 | 0 | 4 | - | Hs_PrP | Homo sapiens |
| 207 | Mr | 6 | 6 | - | 12 | 0 | 4 | - | Bt_PrP | Bos Taurus (cow) |
| 208 | V5 | 14 | 7 | - | 185 | 1 | 5 | - | BVDV_IRES | Bovine viral diarrhea virus |
| 209 | V5 | 14 | 7 | - | 179 | 1 | 7 | - | CSFV_IRES | Classical swine fever virus (hog cholera virus) |
| 210 | Tm | 9 | 7 | - | 3 | 2 | 7 | - | Bp_PK2 | Bordetella pertussis |
| 211 | Vo | 18 | 5 | - | 10 | 7 | 69 | - | PSIV_IRES-PKII | Plautia stali intestine virus |
| 212 | Vo | 4 | 9 | - | 19 | 0 | 15 | - | PSIV_IRES-PKIII | Plautia stali intestine virus |
| 213 | Vo | 9 | 5 | - | 1 | 0 | 9 | - | HiPV_IRES-PKI | Himetobi P virus |
| 214 | Vo | 19 | 5 | - | 8 | 6 | 67 | - | HiPV_IRES-PKII | Himetobi P virus |
| 215 | Vo | 4 | 9 | - | 19 | 0 | 15 | - | HiPV_IRES-PKIII | Himetobi P virus |
| 216 | Vo | 9 | 5 | - | 1 | 0 | 9 | - | DCV_IRES-PKI | Drosophila C virus |
| 217 | Vf | 11 | 6 | - | 3 | 3 | 19 | - | LDV-C | lactate dehydrogenase-elevating virus, strain C |
| 218 | Vf | 12 | 7 | - | 4 | 0 | 15 | - | PRRSV-16244B | Porcine reproductive and respiratory syndrome virus, North American isolate (16244B) |
| 219 | Vo | 18 | 6 | - | 10 | 8 | 67 | - | DCV_IRES-PKII | Drosophila C virus |
| 220 | Vo | 4 | 9 | - | 19 | 0 | 15 | - | DCV_IRES-PKIII | Drosophila C virus |
| 221 | Vo | 9 | 5 | - | 1 | 0 | 9 | - | CrPV_IRES-PKI | Cricket paralysis virus |
| 222 | Vo | 17 | 6 | - | 10 | 8 | 68 | - | CrPV_IRES-PKII | Cricket paralysis virus |
| 223 | Vo | 4 | 9 | - | 19 | 0 | 15 | - | CrPV_IRES-PKIII | Cricket paralysis virus |
| 224 | Vo | 8 | 5 | - | 1 | 0 | 9 | - | TrV_IRES-PKI | Triatoma virus |
| 225 | Vo | 17 | 7 | - | 9 | 8 | 68 | - | TrV_IRES-PKII | Triatoma virus |
| 226 | Vo | 4 | 8 | - | 19 | 1 | 16 | - | TrV_IRES-PKIII | Triatoma virus |
| 227 | Vo | 9 | 5 | - | 1 | 0 | 8 | - | BQCV_IRES-PKI | Black queen cell virus |
| 228 | Vo | 19 | 7 | - | 10 | 6 | 68 | - | BQCV_IRES-PKII | Black queen cell virus |
| 229 | Vo | 4 | 8 | - | 19 | 1 | 18 | - | BQCV_IRES-PKIII | Black queen cell virus |
| 230 | Vo | 12 | 5 | - | 1 | 0 | 7 | - | RhPV_IRES-PKI | Rhopalosiphum padi virus |
| 231 | Vo | 17 | 5 | - | 6 | 7 | 61 | - | RhPV_IRES-PKII | Rhopalosiphum padi virus |
| 232 | Vo | 3 | 7 | - | 20 | 1 | 17 | - | RhPV_IRES-PKIII | Rhopalosiphum padi virus |
| 233 | Vf | 12 | 7 | - | 4 | 0 | 15 | - | PRRSV-LV | Porcine reproductive and respiratory syndrome virus, European Lelystad strain (LV) |
| 234 | Tm | 9 | 7 | - | 3 | 2 | 7 | - | Vp_PK2 | Variovorax paradoxus |
| 235 | Vo | 6 | 5 | - | 4 | 0 | 51 | - | GLV_IRES | Giardiavirus |
| 236 | Mr | 7 | 33 | - | 0 | 4 | 7 | - | IFNG_PK | Homo sapiens |
| 237 | V3 | 5 | 4 | - | 2 | 0 | 6 | - | WNV_PK3end | West Nile virus |
| 238 | V3 | 16 | 5 | - | 3 | 1 | 9 | - | DEN2_PK1 | Dengue virus type 2 |
| 239 | Vo | 11 | 7 | - | 4 | 0 | 358 | - | HIV1_lrPK | human immunodeficiency virus type 1(Mal isolate) |
| 240 | Vf | 4 | 4 | - | 1 | 1 | 8 | - | BChV | beet chlorosis virus |
| 241 | V3 | 5 | 6 | - | 4 | 0 | 6 | - | MMLV_PKb | Montana Myotis leukoencephalitis virus |
| 242 | V3 | 4 | 8 | - | 3 | 0 | 5 | - | RBV_PKb | Rio Bravo virus |
| 243 | Ot | 22 | 9 | - | 8 | 0 | 29 | - | hTER | Homo sapiens |
| 244 | V3 | 10 | 7 | - | 9 | 0 | 9 | - | HAV | hepatitis A virus |
| 245 | V5 | 6 | 5 | - | 2 | 0 | 9 | - | HPeV1 | Human Parechovirus 1 |
| 246 | V5 | 6 | 4 | - | 5 | 0 | 6 | - | HCV | Hepatitis C Virus |
| 247 | Vt | 3 | 4 | - | 2 | 0 | 2 | - | NeRNV_PKa | Nemesia ring necrosis virus |
| 248 | Vt | 6 | 3 | - | 5 | 32 | 8 | - | NeRNV_PKb | Nemesia ring necrosis virus |
| 249 | V3 | 4 | 6 | - | 4 | 0 | 6 | - | NeRNV_UPD-PK1 | Nemesia ring necrosis virus |
| 250 | V3 | 3 | 6 | - | 1 | 0 | 3 | - | NeRNV_UPD-PK2 | Nemesia ring necrosis virus |
| 251 | V3 | 3 | 5 | - | 2 | 1 | 5 | - | NeRNV_UPD-PK3 | Nemesia ring necrosis virus |
| 252 | Ri | 6 | 9 | - | 31 | 5 | 28 | - | ribox02 | - |
| 253 | Vf | 14 | 5 | - | 3 | 0 | 29 | - | WBV | White Bream Virus |
| 254 | Vf | 11 | 7 | - | 3 | 0 | 29 | - | SARS-CoV | SARS coronavirus |
| 255 | V3 | 8 | 10 | - | 15 | 1 | 2 | - | MHV | mouse hepatitis virus |
| 256 | V3 | 8 | 10 | - | 15 | 1 | 2 | - | BCV | bovine coronavirus |
| 257 | Vf | 10 | 9 | - | 3 | 0 | 9 | - | Mm_Edr | Mus musculus (mouse) |
| 258 | Vf | 11 | 5 | - | 3 | 1 | 10 | - | Hs_Ma3 | Homo sapiens |
| 259 | V3 | 6 | 5 | - | 17 | 0 | 16 | - | PYVV1 | potato yellow vein virus |
| 260 | V3 | 5 | 4 | - | 19 | 1 | 18 | - | PYVV2 | potato yellow vein virus |
| 261 | V3 | 6 | 5 | - | 19 | 0 | 16 | - | PYVV3 | potato yellow vein virus |
| 262 | V3 | 8 | 3 | - | 17 | 0 | 16 | - | CuYV1 | cucumber yellows virus |
| 263 | V3 | 7 | 4 | - | 21 | 1 | 16 | - | CYSDV1 | cucurbit yellow stunting disorder virus |
| 264 | V3 | 7 | 4 | - | 21 | 1 | 16 | - | CYSDV2 | cucurbit yellow stunting disorder virus |
| 265 | V3 | 8 | 5 | - | 17 | 1 | 16 | - | SPCSV1 | sweet potato chlorotic stunt virus |
| 266 | V3 | 7 | 4 | - | 6 | 0 | 15 | - | LIYV1 | lettuce infectious yellows virus |
| 267 | V3 | 9 | 5 | - | 27 | 0 | 14 | - | LChV-1 | little cherry virus 1 |
| 268 | V3 | 7 | 4 | - | 3 | 1 | 11 | - | BYV | beet yellows virus |
| 269 | V3 | 7 | 5 | - | 33 | 0 | 4 | - | CTV | citrus tristeza virus |
| 270 | V3 | 8 | 5 | - | 31 | 1 | 1 | - | PMWaV-2 | Pineapple mealybug wilt associated virus - 2 |
| 271 | V3 | 4 | 6 | - | 20 | 0 | 34 | - | GLRaV-3 | Grapevine leafroll-associated virus - 2 |
| 272 | V3 | 8 | 6 | - | 28 | 0 | 5 | - | SCFaV | strawberry chlorotic fleck associated virus |
| 273 | Vo | 5 | 6 | - | 11 | 13 | 0 | - | IAV_PK_NS | influenza A virus, strain A/PR/8/34 |
| 274 | Vo | 6 | 6 | - | 11 | 12 | 0 | - | IBV_PK_NS | influenza B virus, strain B/Victoria/02/1987 |
| 275 | Ri | 6 | 6 | - | 7 | 0 | 52 | - | Bs_glmS_P3.1 | Bacillus subtilis |
| 276 | Ri | 5 | 5 | - | 37 | 13 | 0 | - | Bs_glmS_P1.1 | Bacillus subtilis |
| 277 | V5 | 6 | 5 | - | 3 | 2 | 7 | - | TEV_PK1 | tobacco etch virus |
| 278 | V5 | 6 | 3 | - | 3 | 2 | 4 | - | TEV_PK2 | tobacco etch virus |
| 279 | V5 | 5 | 3 | - | 2 | 0 | 1 | - | TEV_PK3 | tobacco etch virus |
| 280 | Vf | 7 | 7 | - | 5 | 7 | 14 | - | VMV | Visna-Maedi virus |
| 281 | Vf | 5 | 3 | - | 2 | 1 | 9 | - | ScYLV | sugarcane yellow leaf virus |
| 282 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-A_PKI | foot-and-mouth disease virus |
| 283 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-A_PKII | foot-and-mouth disease virus |
| 284 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-A_PKIII | foot-and-mouth disease virus |
| 285 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-O1K_PKI | foot-and-mouth disease virus |
| 286 | V5 | 4 | 3 | - | 3 | 0 | 5 | - | FMDV-O1K_PKII | foot-and-mouth disease virus |
| 287 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-O1K_PKIII | foot-and-mouth disease virus |
| 288 | V5 | 4 | 3 | - | 2 | 0 | 5 | - | FMDV-O1K_PKIV | foot-and-mouth disease virus |
| 289 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-C_PKI | foot-and-mouth disease virus, serotype C |
| 290 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-C_PKII | foot-and-mouth disease virus, serotype C |
| 291 | V5 | 4 | 4 | - | 2 | 0 | 5 | - | FMDV-C_PKIII | foot-and-mouth disease virus, serotype C |
| 292 | V5 | 4 | 3 | - | 2 | 0 | 5 | - | FMDV-C_PKIV | foot-and-mouth disease virus, serotype C |
| 293 | V5 | 4 | 3 | - | 2 | 0 | 5 | - | EMCV-R_PKB | encephalomyocarditis virus |
| 294 | V5 | 3 | 6 | - | 1 | 0 | 3 | - | EMCV-R_PKC | encephalomyocarditis virus |
| 295 | V5 | 4 | 3 | - | 2 | 0 | 5 | - | Mengo_PKB | Mengovirus |
| 296 | V5 | 3 | 5 | - | 1 | 0 | 3 | - | Mengo_PKC | Mengovirus |
| 297 | V5 | 5 | 7 | - | 2 | 0 | 5 | - | HAV_PK1 | hepatitis A virus |
| 298 | V5 | 3 | 5 | - | 4 | 0 | 2 | - | HAV_PK2 | hepatitis A virus |
| 299 | V5 | 3 | 6 | - | 1 | 0 | 2 | - | TMEV | Theiler\'s murine encephalomyelitis virus |
| 300 | Ap | 5 | 6 | - | 2 | 0 | 3 | - | antiHIV1-RT_1.1 | |
| 301 | Ap | 5 | 4 | - | 2 | 2 | 4 | - | antiHIV1-RT_1.3a | |
| 302 | Ap | 7 | 4 | - | 3 | 1 | 4 | - | antiHIV1-NC_psi-50-1 | |
| 303 | Ot | 5 | 9 | - | 27 | 10 | 8 | - | R2_retroPK | Bombyx mori |
| 304 | Ap | 5 | 3 | - | 3 | 6 | 8 | - | SBU | B. subtilis |
| 305 | Ot | 5 | 10 | - | 27 | 10 | 9 | - | R2_retroPK_Sc | Samia cynthia |
| 306 | Ot | 5 | 10 | - | 27 | 10 | 7 | - | R2_retroPK_Ch | Coscinocera hercules |
| 307 | Ot | 5 | 10 | - | 27 | 10 | 9 | - | R2_retroPK_Cpr | Callosamia promethea |
| 308 | Ot | 5 | 10 | - | 27 | 10 | 8 | - | R2_retroPK_Spy | Saturnia pyri |
| 309 | Mr | 6 | 24 | - | 0 | 4 | 5 | - | IFNG_PK_B_taurus | Bos taurus (cow) |
| 310 | Mr | 6 | 33 | - | 0 | 2 | 6 | - | IFNG_PK_C_familiaris | Canis familiaris (dog) |
| 311 | Mr | 6 | 36 | - | 0 | 4 | 8 | - | IFNG_PK_C_jacchus | Callitrix jacchus (marmoset) |
| 312 | Mr | 5 | 20 | - | 2 | 14 | 17 | - | IFNG_PK_M_musculus | Mus musculus (mouse) |
| 313 | Mr | 5 | 28 | - | 0 | 4 | 9 | - | IFNG_PK_S_scrofa | Sus scrofa (pig) |
| 314 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Bt | cow |
| 315 | Ri | 6 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Cf | dog |
| 316 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Hs | Homo sapiens |
| 317 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_La | elephant |
| 318 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Md | opossum |
| 319 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Mm | mouse |
| 320 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Oc | rabbit |
| 321 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Pt | chimpanzee |
| 322 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | CPEB3_rz_Rn | rat |
| 323 | Ri | 7 | 11 | x | 39 | 0 | 1 | x | drz_Agam_2_1 | Anopheles gambiae |
| 324 | Ri | 7 | 10 | x | 42 | 0 | 1 | x | drz_Agam_2_2 | Anopheles gambiae |
| 325 | Ri | 7 | 8 | x | 2 | 0 | 1 | x | drz_Bflo_1 | Branchiostoma floridae |
| 326 | Ri | 7 | 8 | x | 1 | 0 | 2 | x | drz_Bflo_2 | Branchiostoma floridae |
| 327 | Ri | 7 | 8 | x | 6 | 0 | 1 | x | drz_Agam_1_1 | Anopheles gambiae |
| 328 | Ri | 7 | 8 | x | 5 | 0 | 1 | x | drz_Agam_1_2 | Anopheles gambiae |
| 329 | Ri | 7 | 8 | x | 5 | 0 | 1 | x | drz_Agam_1_3 | Anopheles gambiae |
| 330 | Ri | 7 | 8 | x | 1 | 0 | 2 | x | drz_Spur_1_1 | Strongylocentrotus purpuratus |
| 331 | Ri | 7 | 8 | x | 1 | 0 | 2 | x | drz_Spur_1_2 | Strongylocentrotus purpuratus |
| 332 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | drz_Spur_2 | Strongylocentrotus purpuratus |
| 333 | Ri | 6 | 7 | x | 2 | 0 | 1 | x | drz_Spur_3 | Strongylocentrotus purpuratus |
| 334 | Ri | 7 | 7 | x | 2 | 0 | 1 | x | drz_Spur_4 | Strongylocentrotus purpuratus |
| 335 | Ri | 7 | 6 | x | 2 | 0 | 1 | x | drz_Cjap_1 | Caenorhabditis japonica |
| 336 | Ri | 7 | 8 | x | 2 | 0 | 1 | x | drz_Ppac_1_1 | Pristionchus pacificus |
| 337 | Ri | 7 | 8 | x | 2 | 0 | 1 | x | drz_Ppac_1_2 | Pristionchus pacificus |
| 338 | Ri | 7 | 7 | x | 2 | 0 | 2 | x | drz_Pmar_1 | Petromyzon marinus |
| 339 | Ri | 7 | 8 | x | 1 | 0 | 1 | x | drz_Fpra_1 | Faecalibacterium prausnitzii |
| 340 | Ri | 7 | 8 | x | 1 | 0 | 1 | x | drz_CIV_1 | Invertebrate iridescent virus 6 |
| 341 | Ri | 7 | 8 | x | 6 | 0 | 1 | x | drz_Dpap_1 | Diplonema papillatum |
| 342 | Ri | 7 | 7 | x | 9 | 0 | 1 | x | drz_Tatr_1 | Trichoderma atroviride |
PseudoKnots sorted on properties