 |
Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
 |
BBMV3 |  |
|||
| PKB-number: | PKB135 |
| Definition: | tRNA-like structure 3'end pseudoknot of RNA3 of broad bean mottle virus |
| Organism: | broad bean mottle virus |
| Abbreviation: | BBMV3 |
| RNA type: | Viral tRNA-like |
| Keywords: | bromovirus; RNA 3'end; aminoacylation |
| EMBL number: | K01778 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison |
| References: |
[1] Ahlquist P. et al. (1981). Cell 23:183-189.
[2] Rietveld K. et al. (1983). EMBO J. 2:1079-1085. [3] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324. |
| Comment: | RNAs 1 and 2 of BBMV contain similar structures. Subgenomic RNA 4 is derived from RNA 3, with the same 3'end. |
| Stem sizes: Loop sizes: |
13 6 2 0 31 |
| Position Paired: | 153-159; 219-225 162-167; 176-181 170-175; 257-262 187-191; 214-218 193-198; 204-209 226-234; 239-247 |
| Bracket view of structure: |
160 170 180 190 200 210
# 123456789|123456789|123456789|123456789|123456789|123456789|
$ 151 AAGAUAUCUGUACCGUCUUCUCCCCGACGGUUUCAAUCCAUAGCUUCACGUUGUGUAGCG=210
% 151 ::(((((((::((((((::[[[[[[)))))):::::(((((:((((((:::::)))))):
220 230 240 250 260
# 123456789|123456789|123456789|123456789|123456789|123456
$ 211 UAGGUGGAAGGUAUCGUGUGGUGUAUAAACACCACAUAGUCUCUUAGGGGAGACCA=266
% 211 :::))))))))))))(((((((((::::))))))))):::::::::]]]]]]::::