Intro
About PseudoBase Retrieve by class or by by property Submit Pseudoknots
TRV-PSG2_PK1

PKB-number: PKB158
Definition: Pseudoknot PK1 of the pseudoknot domain of RNA2
Organism: tobacco rattle virus, strain PSG
Abbreviation: TRV-PSG2_PK1
RNA type: Viral others
Keywords: tobravirus
EMBL number: X03686
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Sequence comparison
References: [1] Pleij C.W.A. et al. (1987). In: "Positive Strand RNA Viruses" (Brinton M.A. & Rueckert R., Eds.), Alan R. Liss, Inc., New York, pp 299-316.
Comment: Homologous pseudoknot is folded in TRV RNA2 from CAM strain [1].
Stem sizes:
Loop sizes:
4 5
5 0 3
Position Paired:
1218-1221; 1232-1235
1227-1231; 1239-1243
Bracket view of structure:
             1220      1230      1240
      #      789|123456789|123456789|1234
      $ 1217 CUUUAAGGGACCUUGUGAAAUUCAAGGG=1244
      % 1217 :((((:::::[[[[[)))):::]]]]]:     

Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-12-17 PKB00158.html