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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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BVDV_IRES |  |
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| PKB-number: | PKB208 |
| Definition: | IRES domain IIIef |
| Organism: | Bovine viral diarrhea virus |
| Abbreviation: | BVDV_IRES |
| RNA type: | Viral 5 UTR |
| Keywords: | flaviviridae; pestivirus; translation; internal ribosomal entry site (IRES) |
| EMBL number: | M31182 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison |
| References: |
[1] Brown E.A. et al. (1992). Nucleic Acids Res. 20:5041-5045.
[2] Wang C. et al. (1995). RNA 1:526-537. |
| Stem sizes: Loop sizes: |
14 7 185 1 5 |
| Position Paired: | 139-145; 355-361 146-152; 346-352 153-154; 321-322 323-326; 331-334 338-344; 367-373 |
| Bracket view of structure: |
140 150
# 89|123456789|12345(164)
$ 138 GGGUAGCAACAGUGGUGA=155
% 138 :((((((((((((((((:
320 330 340 350 360 370
#(164)|123456789|123456789|123456789|123456789|123456789|1234
$ 320 ACAGCCUGAUAGGGUGCUGCAGAGGCCCACUGUAUUGCUACUAAAAAUCUCUGCU=374
% 320 :))((((::::)))):::[[[[[[[:)))))))::))))))):::::]]]]]]]: