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CuYV1

PKB-number: PKB262
Definition: A 3'-terminal pseudoknot in CuYV RNA 1
Organism: cucumber yellows virus
Abbreviation: CuYV1
RNA type: Viral 3 UTR
Keywords: Closteroviridae; Crinivirus
EMBL number: AB085612
Submitted by: A.P. Gultyaev ( a.p.gultyaev@biology.leidenuniv.nl)
Supported by: Sequence comparison;
References: [1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
Comment: Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses [1].
Stem sizes:
Loop sizes:
8 3
17 0 16
Position Paired:
7845-7852; 7873-7880
7856-7859; 7865-7868
7870-7872; 7897-7899
Bracket view of structure:
          7850      7860      7870      7880      7890
#      456789|123456789|123456789|123456789|123456789|123456789
$ 7844 CGUUUGGUCGAAUGCUACUAGAGCAGCCUGACCAAACUAGUAUUAGUAAAUAAAGG=7899
% 7844 :((((((((:::((((:::::)))):[[[))))))))::::::::::::::::]]]

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© final design and maintenance: F.H.D.(Eke) van Batenburg; 2007-5-17 PKB00262.html