PKB-number: |
PKB262
|
Definition: |
A 3'-terminal pseudoknot in CuYV RNA 1
|
Organism: |
cucumber yellows virus
|
Abbreviation: |
CuYV1
|
RNA type: |
Viral 3 UTR
|
Keywords: |
Closteroviridae; Crinivirus
|
EMBL number: |
AB085612
|
Submitted by: |
A.P. Gultyaev
(
a.p.gultyaev@biology.leidenuniv.nl)
|
Supported by: |
Sequence comparison; |
References: |
[1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
|
Comment: |
Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses [1].
|
Stem sizes: Loop sizes: |
8 3
17 0 16 |
Position Paired: |
7845-7852; 7873-7880
7856-7859; 7865-7868
7870-7872; 7897-7899 |
Bracket view of structure:
|
7850 7860 7870 7880 7890
# 456789|123456789|123456789|123456789|123456789|123456789
$ 7844 CGUUUGGUCGAAUGCUACUAGAGCAGCCUGACCAAACUAGUAUUAGUAAAUAAAGG=7899
% 7844 :((((((((:::((((:::::)))):[[[))))))))::::::::::::::::]]]
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2007-5-17 PKB00262.html