PKB-number: |
PKB265
|
Definition: |
A 3'-terminal pseudoknot in CPCSV RNA 1
|
Organism: |
sweet potato chlorotic stunt virus
|
Abbreviation: |
SPCSV1
|
RNA type: |
Viral 3 UTR
|
Keywords: |
Closteroviridae; Crinivirus
|
EMBL number: |
AJ428554
|
Submitted by: |
A.P. Gultyaev
(
a.p.gultyaev@biology.leidenuniv.nl)
|
Supported by: |
Sequence comparison; |
References: |
[1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
|
Comment: |
Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses. An identical pseudoknot is predicted in SPCSV RNA 2 [1].
|
Stem sizes: Loop sizes: |
8 5
17 1 16 |
Position Paired: |
9348-9355; 9379-9386
9361-9364; 9369-9372
9373-9377; 9403-9407 |