| PKB-number: |
PKB265
|
| Definition: |
A 3'-terminal pseudoknot in CPCSV RNA 1
|
| Organism: |
sweet potato chlorotic stunt virus
|
| Abbreviation: |
SPCSV1
|
| RNA type: |
Viral 3 UTR
|
| Keywords: |
Closteroviridae; Crinivirus
|
| EMBL number: |
AJ428554
|
| Submitted by: |
A.P. Gultyaev
(
a.p.gultyaev@biology.leidenuniv.nl)
|
| Supported by: |
Sequence comparison; |
| References: |
[1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
|
| Comment: |
Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses. An identical pseudoknot is predicted in SPCSV RNA 2 [1].
|
Stem sizes:
Loop sizes: |
8 5
17 1 16 |
| Position Paired: |
9348-9355; 9379-9386
9361-9364; 9369-9372
9373-9377; 9403-9407 |
