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SPCSV1

PKB-number: PKB265
Definition: A 3'-terminal pseudoknot in CPCSV RNA 1
Organism: sweet potato chlorotic stunt virus
Abbreviation: SPCSV1
RNA type: Viral 3 UTR
Keywords: Closteroviridae; Crinivirus
EMBL number: AJ428554
Submitted by: A.P. Gultyaev ( a.p.gultyaev@biology.leidenuniv.nl)
Supported by: Sequence comparison;
References: [1] Livieratos I.C. et al. (2004). J. Gen. Virol. 85:2065-2075.
Comment: Similar pseudoknots are predicted in criniviruses and some of the closteroviruses and ampeloviruses. An identical pseudoknot is predicted in SPCSV RNA 2 [1].
Stem sizes:
Loop sizes:
8 5
17 1 16
Position Paired:
9348-9355; 9379-9386
9361-9364; 9369-9372
9373-9377; 9403-9407
Bracket view of structure:
       9350      9360      9370      9380      9390      9400
#      789|123456789|123456789|123456789|123456789|123456789|1234567
$ 9347 CGGUUUUCCUAAAUCGUCGUGAGACGGACCUUGGAAAACCUAGUAUUUAAAUAACUAGGUC=9407
% 9347 :((((((((:::::((((::::))))[[[[[:))))))))::::::::::::::::]]]]]

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© final design and maintenance: F.H.D.(Eke) van Batenburg; 2007-5-17 PKB00265.html