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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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TV3_ori |
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| PKB-number: | PKB366 |
| Definition: | 5\'-terminal region |
| Organism: | Turdivirus 3 |
| Abbreviation: | TV3_ori |
| RNA type: | Viral 5 UTR |
| Keywords: | Picornaviridae; IRES |
| EMBL number: | GU182410 |
| Submitted by: | A.P. Gultyaev (a.p.gultyaev@biology.leidenuniv.nl) |
| Supported by: | Sequence comparison |
| References: | [1] Sweeney TR et al. (2012). J. Virol. 86:1468-1486. |
| Stem sizes: Loop sizes: |
5 5 2 0 46 |
| Position Paired: | 43 -47 ; 55 -59 |
| Bracket view of structure: |
50 60 70 80 90 100
# 123456789|123456789|123456789|123456789|123456789|123456789|
$ 41 UCCGUCCAAGCCGCGGACGUUAAACUGUGGCACGGUUGUGCCUAGGUGCAACCCUGCUAC=100
% 41 ::(((((::[[[[[))))):::::::((((((:((((((((::::)))))))):))))))
110 120
# 123456789|123456789|
$ 101 UAAUGGCGGUACCCCUGCCC=120
% 101 :::::]]]]]::::::::::