PSEUDOBASE DATA: PKB398-PDV3

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About PseudoBase	Retrieve by class or by by property		Submit Pseudoknots
		PDV3

PKB-number:	PKB398
Definition:	tRNA-like structure pseudoknot of RNA3
Organism:	Prune dwarf virus
Abbreviation:	PDV3
RNA type:	Viral tRNA-like
Keywords:	Bromoviridae; Ilarvirus
EMBL number:	NC_008038
Submitted by:	A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by:	Sequence comparison
References:	[1]Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864. [2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes: Loop sizes:	15 6 1 1 51
Position Paired:	2028-2035; 2064-2071 2036-2037; 2061-2062 2039-2043; 2052-2056 2075-2079; 2083-2087 2093-2099; 2104-2110 2045-2050; 2123-2128

Bracket view of structure:

      2030      2040      2050      2060      2070      2080      2090
#      89|123456789|123456789|123456789|123456789|123456789|123456789|
$ 2028 GAUGAAAAUGCCCAUUGUAUCCUGAAUGGAUGACACUUUUCAUUGCCUACAAAUUUUGUACAU=2090
% 2028 ((((((((((:(((((:[[[[[[:)))))::::)):)))))))):::(((((:::))))):::

             2100      2110      2120
#      123456789|123456789|123456789|123456789
$ 2091 GCCCUCACCGUAAGGUGAGGAUGCCCCUUUAAGGGAUGC=2129
% 2091 ::(((((((::::)))))))::::::::::::]]]]]]:

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