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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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TMV_UPD-PK1 |  |
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| PKB-number: | PKB53 |
| Definition: | Pseudoknot PK1 of the upstream pseudoknot domain (UPD) of 3'-UTR of tobacco mosaic virus |
| Organism: | tobacco mosaic virus |
| Abbreviation: | TMV_UPD-PK1 |
| RNA type: | Viral 3 UTR |
| Keywords: | tobamovirus; translational regulation |
| EMBL number: | J02415 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Mutagenesis; Sequence comparison; Structure probing |
| References: |
[1] van Belkum A. et al. (1985). Nucleic Acids Res. 13:7673-7686.
[2] Leathers V. et al. (1993). Mol. Cell. Biol. 13:5331-5347. [3] Felden B. et al. (1996). RNA 2:201-212. |
| Comment: | This is the most extensively studied representative structure from tobamoviruses. The sequence is given for the so-called "strain vulgare". |
| Stem sizes: Loop sizes: |
3 4 1 0 5 |
| Position Paired: | 6218-6220; 6226-6228 6222-6225; 6234-6237 |
| Bracket view of structure: |
6220 6230
# 6789|123456789|1234567
$ 6216 ACGGAUUGUGUCCGUAAUCACA=6237
% 6216 ::(((:[[[[))):::::]]]]