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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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PMMV-S_UPD-PK3 |  |
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| PKB-number: | PKB97 |
| Definition: | Pseudoknot PK3 of the upstream pseudoknot domain (UPD) of the 3'-UTR of pepper mild mottle virus, Spanish isolate |
| Organism: | pepper mild mottle virus |
| Abbreviation: | PMMV-S_UPD-PK3 |
| RNA type: | Viral 3 UTR |
| Keywords: | tobamovirus; translational regulation |
| EMBL number: | M81413 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison |
| References: |
[1] Avila-Rincon M.J. et al. (1989). J. Gen. Virol. 70:3025-3031.
[2] Leathers V. et al. (1993). Mol. Cell. Biol. 13:5331-5347. |
| Stem sizes: Loop sizes: |
4 5 5 0 6 |
| Position Paired: | 6220-6223; 6234-6237 6229-6232; 6246-6249 6233-6233; 6244-6244 |
| Bracket view of structure: |
6220 6230 6240 6250
# 9|123456789|123456789|123456789|
$ 6219 UAGUGUUUUUCCCUCCACUUAAAUCGAAGGGU=6250
% 6219 :((((:::::[[[[[))))::::::]:]]]]: