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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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IBV |  |
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| PKB-number: | PKB106 |
| Definition: | Orf1a/orf1b (putative polymerase) ribosomal frameshift site of infectious bronchitis virus |
| Organism: | infectious bronchitis virus |
| Abbreviation: | IBV |
| RNA type: | Viral Frameshift |
| Keywords: | coronavirus; ribosomal frameshifting; polymerase |
| EMBL number: | M27472 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Mutagenesis; Sequence comparison; Structure probing |
| References: |
[1] ten Dam E. et al. (1990). Virus Genes 4:121-136.
[2] Brierley I. et al. (1991). J. Mol. Biol. 220:889-902. [3] Napthine S. et al. (1999). J. Mol. Biol. 288:305-320. [4] Liphardt J. et al. (1999). J. Mol. Biol. 288:321-335. |
| Stem sizes: Loop sizes: |
11 7 1 0 32 |
| Position Paired: | 81-91; 100-110 93-99; 143-149 |
| Bracket view of structure: |
70 80 90 100 110 140 150
# 89|123456789|123456789|123456789|123456789|123=113 |123456789|
$ 68 UUUAAACGGGUACGGGGUAGCAGUGAGGCUCGGCUGAUACCCCUUG.....AAGCGAGCCUU=150
% 68 :::::::::::::(((((((((((:[[[[[[[))))))))))):::.....:::]]]]]]]: