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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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STMV_PKbulge |  |
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| PKB-number: | PKB142 |
| Definition: | tRNA-like structure bulge pseudoknot of satellite tobacco mosaic virus |
| Organism: | satellite tobacco mosaic virus |
| Abbreviation: | STMV_PKbulge |
| RNA type: | Viral tRNA-like |
| Keywords: | tobamovirus; satellite virus; RNA 3'end |
| EMBL number: | M25782 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison |
| References: |
[1] Gultyaev A.P. et al. (1994). J. Gen. Virol. 75:2851-2856.
[2] Felden B. et al. (1994). Nucleic Acids Res. 22:2882-2886. [3] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324. |
| Stem sizes: Loop sizes: |
7 5 4 34 7 |
| Position Paired: | 951-957; 1001-1007 967-972; 995-1000 976-978; 992-994 980-982; 988-990 962-966; 1015-1019 |
| Bracket view of structure: |
950 960 970 980 990 1000 1010 1020
# |123456789|123456789|123456789|123456789|123456789|123456789|123456789|
$ 950 UUUUGUUUUGGUCUUCCCGAACGCAUACGUUAGUGUGACUACCGUUGUUCGAAACAAGUAAAACAGGAAGG=1020
% 950 :(((((((::::[[[[[((((((:::(((:(((:::::))):)))))))))))))))):::::::]]]]]: