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STMV_PKbulge

PKB-number: PKB142
Definition: tRNA-like structure bulge pseudoknot of satellite tobacco mosaic virus
Organism: satellite tobacco mosaic virus
Abbreviation: STMV_PKbulge
RNA type: Viral tRNA-like
Keywords: tobamovirus; satellite virus; RNA 3'end
EMBL number: M25782
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Sequence comparison
References: [1] Gultyaev A.P. et al. (1994). J. Gen. Virol. 75:2851-2856.
[2] Felden B. et al. (1994). Nucleic Acids Res. 22:2882-2886.
[3] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324.
Stem sizes:
Loop sizes:
7 5
4 34 7
Position Paired:
951-957; 1001-1007
967-972; 995-1000
976-978; 992-994
980-982; 988-990
962-966; 1015-1019
Bracket view of structure:
         950       960       970       980       990      1000      1010      1020
     #     |123456789|123456789|123456789|123456789|123456789|123456789|123456789|
     $ 950 UUUUGUUUUGGUCUUCCCGAACGCAUACGUUAGUGUGACUACCGUUGUUCGAAACAAGUAAAACAGGAAGG=1020
     % 950 :(((((((::::[[[[[((((((:::(((:(((:::::))):)))))))))))))))):::::::]]]]]:

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© final design and maintenance: F.H.D.(Eke) van Batenburg; 1999-10-11 PKB00142.html