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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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HAV |  |
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| PKB-number: | PKB244 |
| Definition: | HAV 3'end pseudoknot |
| Organism: | hepatitis A virus |
| Abbreviation: | HAV |
| RNA type: | Viral 3 UTR |
| Keywords: | RNA replication; protein binding |
| EMBL number: | M16632 |
| Submitted by: | A.P. Gultyaev ( gultyaev@rulsfb.LeidenUniv.nl) |
| Supported by: | Structure probing; |
| References: | [1] Dollenmaier G. & Weitz M. (2003). J. Gen. Virol. 84:403-414. |
| Comment: | |
| Stem sizes: Loop sizes: |
10 7 9 0 9 |
| Position Paired: | 7420-7429; 7446-7455 7439-7441; 7470-7472 7442-7445; 7465-7468 |
| Bracket view of structure: |
7420 7430 7440 7450 7460 7470
# 9|123456789|123456789|123456789|123456789|123456789|123
$ 7419 UUAAACAAAUUUUCUUAAAAUUUCUGAGGUUUGUUUAUUUCUUUUAUCAGUAAAU=7473
% 7419 :((((((((((:::::::::[[[[[[[)))))))))):::::::::]]]]:]]]: