| PKB-number: |
PKB303
|
| Definition: |
R2 retrotransposon pseudoknot
|
| Organism: |
Bombyx mori
|
| Abbreviation: |
R2_retroPK
|
| RNA type: |
Others
|
| Keywords: |
retrotransposon; NAPSS
|
| EMBL number: |
AF436853
|
| Submitted by: |
A.P. Gultyaev
(a.p.gultyaev@biology.leidenuniv.nl)
|
| Supported by: |
NMR,NMR-assisted prediction (NAPSS)
|
| References: |
[1] Hart J.M. et al. (2008). J. Am. Chem. Soc. 130:10233-10239.
|
Stem sizes:
Loop sizes: |
5 9
27 10 8
|
| Position Paired: |
79 -83 ; 131-135
88 -92 ; 103-107
94 -95 ; 100-101
121-123; 128-130
111-113; 150-152
115-120; 144-149
|
| Bracket view of structure:
|
80 90 100 110 120 130 140 150
# 89|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123
$ 78 AGCCCCGAUGGACGGACCGCGAGGACCGUCAAGCCUAGCAGGUACCUUCGGGUGGGGCCUUGCGAUACCUGCGGGC=153
% 78 :(((((::::(((((:((::::)):))))):::[[[:[[[[[[(((::::))))))))::::::::]]]]]]]]]:
Contact:
© final design and maintenance: F.H.D.(Eke) van Batenburg; 2008-8-14 PKB00303.HTML
