PSEUDOBASE DATA: PKB396-PNRSV3

Intro
About PseudoBase	Retrieve by class or by by property		Submit Pseudoknots
		PNRSV3

PKB-number:	PKB396
Definition:	tRNA-like structure pseudoknot of RNA3
Organism:	Prunus necrotic ringspot virus
Abbreviation:	PNRSV3
RNA type:	Viral tRNA-like
Keywords:	Bromoviridae; Ilarvirus
EMBL number:	NC_004364
Submitted by:	A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by:	Mutagenesis,Sequence comparison,circular dichroism
References:	[1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864. [2] Aparicio F. et al. (2003). Virology 313:213-223. [3] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes: Loop sizes:	15 6 1 0 49
Position Paired:	1859-1865; 1895-1901 1866-1873; 1881-1888 1905-1908; 1913-1916 1921-1927; 1933-1939 1875-1880; 1951-1956

Bracket view of structure:

      1860      1870      1880      1890      1900      1910      1920
#      89|123456789|123456789|123456789|123456789|123456789|123456789|
$ 1858 UAGAUUUCUGAAAGUCGCUUCCCGGCUUUCAUGCUUGGAAAUCUUACCUGCGUUAGCAGAUGC=1920
% 1858 :(((((((((((((((:[[[[[[))))))))::::::))))))):::((((::::))))::::

             1930      1940      1950
#      123456789|123456789|123456789|1234567
$ 1921 CCACAACGUGAAGUUGUGGAUGCCCCGUUAGGGAAGC=1957
% 1921 (((((((:::::))))))):::::::::::]]]]]]:

Home

Visits

Visiters