PSEUDOBASE DATA: PKB395-FCiLV3

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About PseudoBase	Retrieve by class or by by property		Submit Pseudoknots
		FCiLV3

PKB-number:	PKB395
Definition:	tRNA-like structure pseudoknot of RNA3
Organism:	Fragaria chiloensis latent virus
Abbreviation:	FCiLV3
RNA type:	Viral tRNA-like
Keywords:	Bromoviridae; Ilarvirus
EMBL number:	NC_006568
Submitted by:	A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by:	Sequence comparison
References:	[1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864. [2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes: Loop sizes:	16 6 1 1 56
Position Paired:	2377-2386; 2412-2421 2387-2392; 2401-2406 2424-2430; 2434-2440 2445-2452; 2460-2467 2394-2399; 2478-2483

Bracket view of structure:

        2380      2390      2400      2410      2420      2430      2440
#      6789|123456789|123456789|123456789|123456789|123456789|123456789|
$ 2376 AGUAAGUUUCUCCUAUCGCCAUCUGGAUGGGAUUUAAGAGACUUAUGCCAAACUCUUUGAGUUUG=2440
% 2376 :((((((((((((((((:[[[[[[:)))))):::::))))))))))::(((((((:::)))))))

             2450      2460      2470      2480
#      123456789|123456789|123456789|123456789|1234
$ 2441 AUGCCAAUUCAGUUUUCGUCUGAAUUGAUGCCCGAAAGGAUGGC=2484
% 2441 ::::((((((((:::::::))))))))::::::::::]]]]]]:

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