PSEUDOBASE DATA: PKB394-HJLV3

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About PseudoBase	Retrieve by class or by by property		Submit Pseudoknots
		HJLV3

PKB-number:	PKB394
Definition:	tRNA-like structure pseudoknot of RNA3
Organism:	Humulus japonicus latent virus
Abbreviation:	HJLV3
RNA type:	Viral tRNA-like
Keywords:	Bromoviridae; Ilarvirus
EMBL number:	NC_006066
Submitted by:	A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by:	Sequence comparison
References:	[1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864. [2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes: Loop sizes:	14 4 4 0 51
Position Paired:	1837-1841; 1875-1879 1843-1844; 1872-1873 1845-1846; 1869-1870 1847-1851; 1860-1864 1882-1888; 1893-1899 1904-1909; 1914-1919 1856-1859; 1931-1934

Bracket view of structure:

        1840      1850      1860      1870      1880      1890
#      6789|123456789|123456789|123456789|123456789|123456789|
$ 1836 AGACAUAUAUGCCUAUUGCCCCCUGUAGGAGUGCACUAGAUGUUGCGUGAAGAUA=1890
% 1836 :(((((:(((((((((::::[[[[)))))::::)):)):)))))::(((((((::

             1900      1910      1920      1930
#      123456789|123456789|123456789|123456789|12345678
$ 1891 UUUCUUCAUUUGCCCUACCAAAAGGUAGGAUGCCCCUUUAAGGGAGGC=1938
% 1891 ::)))))))::::((((((::::)))))):::::::::::]]]]::::

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