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Ec_PK3

PKB-number: PKB51
Definition: Pseudoknot PK3 of E.coli tmRNA
Organism: E.coli
Abbreviation: Ec_PK3
RNA type: tmRNA
Keywords: trans-translation; peptide tagging; tmRNA
EMBL number: U68074
Submitted by: A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl)
Supported by: Sequence comparison; Structure probing
References: [1] Williams KP & Bartel DP. (1996). RNA 2:1306-1310.
[2] Felden B. et al. (1997). RNA 3:89-103.
[3] Williams K.P. (2000). Nucleic Acids Res. 28:168. (The tmRNA Website: http://www.indiana.edu/~tmrna/).
[4] Zwieb C. & Wower J. (2000). Nucleic Acids Res. 28:169-170.
Stem sizes:
Loop sizes:
9 5
1 0 11
Position Paired:
200-203; 226-229
207-211; 218-222
213-217; 241-245
Bracket view of structure:
         200       210       220       230       240
     #     |123456789|123456789|123456789|123456789|12345
     $ 200 GCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGC=245
     % 200 ((((:::(((((:[[[[[))))):::)))):::::::::::]]]]]

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