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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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BSMVbeta |  |
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| PKB-number: | PKB138 |
| Definition: | tRNA-like structure 3'end pseudoknot of RNA beta of barley stripe mosaic virus |
| Organism: | barley stripe mosaic virus |
| Abbreviation: | BSMVbeta |
| RNA type: | Viral tRNA-like |
| Keywords: | hordeivirus; RNA 3'end; aminoacylation |
| EMBL number: | X03854 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison; Structure probing |
| References: |
[1] Kozlov Y.V. et al. (1984). Nucleic Acids Res. 12:4001-4009.
[2] Mans R.M.W. et al. (1991). Eur. J. Biochem. 201:303-324. |
| Comment: | RNA gamma of BSMV contains similar structure. |
| Stem sizes: Loop sizes: |
14 5 2 1 27 |
| Position Paired: | 3195-3202; 3246-3253 3205-3210; 3219-3224 3213-3217; 3281-3285 3229-3234; 3240-3245 3255-3260; 3266-3271 |
| Bracket view of structure: |
3200 3210 3220 3230 3240 3250
# 456789|123456789|123456789|123456789|123456789|123456789|123
$ 3194 AUUGGUAUGUAAGCUACAACUUCCGGUAGCUGCGUCACACUUUAAGAGUGUGCAUACUGA=3253
% 3194 :((((((((::((((((::[[[[[:))))))::::((((((:::::))))))))))))))
3260 3270 3280
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$ 3254 GCCGAAGCUCAGCUUCGGUCCCCCAAGGGAAGACCA=3289
% 3254 :((((((:::::)))))):::::::::]]]]]::::