 |
Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
 |
LRSVbeta |  |
|||
| PKB-number: | PKB168 |
| Definition: | tRNA-like structure 3'end pseudoknot of RNA beta |
| Organism: | lychnis ringspot virus |
| Abbreviation: | LRSVbeta |
| RNA type: | Viral tRNA-like |
| Keywords: | hordeivirus; RNA 3'end |
| EMBL number: | Z46351 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Sequence comparison |
| References: | [1] Solovyev A.G. et al. (1996). Virology 219:9-18. |
| Stem sizes: Loop sizes: |
13 5 3 2 34 |
| Position Paired: | 2997-3004; 3050-3057 3009-3013; 3024-3028 3017-3021; 3092-3096 3034-3039; 3044-3049 3059-3068; 3074-3083 |
| Bracket view of structure: |
3000 3010 3020 3030 3040 3050
# 6789|123456789|123456789|123456789|123456789|123456789|12345
$ 2996 AUUGGUGAUUAUUUCCGCUUACUCCUGUGCGGAUGCAACAAUGUUUUGACAUUGAUCACU=3055
% 2996 :((((((((::::(((((:::[[[[[::))))):::::((((((::::))))))))))))
3060 3070 3080 3090 3100
# 6789|123456789|123456789|123456789|123456789|
$ 3056 GAGUUUCAGACUGACUAACAGUCUGGGAUCCCCCAAGGGAGACCA=3100
% 3056 )):((((((((((:::::))))))))))::::::::]]]]]::::