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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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RSV |  |
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| PKB-number: | PKB174 |
| Definition: | Gag/pol ribosomal frameshift site |
| Organism: | Rous sarcoma virus |
| Abbreviation: | RSV |
| RNA type: | Viral Frameshift |
| Keywords: | Avian type C retrovirus; ribosomal frameshifting; gag/pol |
| EMBL number: | V01197 |
| Submitted by: | A.P.Gultyaev ( A.P.Gultyaev@Biology.LeidenUniv.nl) |
| Supported by: | Mutagenesis; Structure probing |
| References: |
[1] Jacks T. et al. (1988). Cell 55:447-458.
[2] Marczinke B. et al. (1998). J. Mol. Biol. 284:205-225. |
| Stem sizes: Loop sizes: |
14 8 11 52 11 |
| Position Paired: | 2484-2488; 2579-2583 2489-2497; 2569-2577 2517-2522; 2541-2546 2525-2529; 2536-2540 2547-2552; 2557-2562 2509-2516; 2595-2602 |
| Bracket view of structure: |
2480 2490 2500 2510 2520 2530 2540
# 6789|123456789|123456789|123456789|123456789|123456789|123456789|
$ 2476 AAAUUUAUAGGGAGGGCCACUGUUCUCACUGUUGCGCUACAUCUGGCUAUUCCGCUCAAAUGGAA=2540
% 2476 ::::::::((((((((((((((:::::::::::[[[[[[[[((((((::(((((::::::)))))
2550 2560 2570 2580 2590 2600
# 123456789|123456789|123456789|123456789|123456789|123456789|123
$ 2541 GCCAGACCACACGCCUGUGUGGAUUGACCAGUGGCCCCUCCCUGAAGGUAAACUUGUAGCGCU=2603
% 2541 ))))))((((((::::))))))::::::))))))))):))))):::::::::::]]]]]]]]: