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Intro | ||||
| About PseudoBase | Retrieve by class or by by property | Submit Pseudoknots | |||
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SARS-CoV |  |
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| PKB-number: | PKB254 |
| Definition: | ORF1a/1b ribosomal frameshift site of SARS coronavirus |
| Organism: | SARS coronavirus |
| Abbreviation: | SARS-CoV |
| RNA type: | Viral Frameshift |
| Keywords: | Coronaviridae; ribosomal frameshifting |
| EMBL number: | NC_004718 |
| Submitted by: | A.P. Gultyaev ( a.p.gultyaev@biology.leidenuniv.nl) |
| Supported by: | Sequence comparison; |
| References: |
[1] Thiel V. et al. (2003). J. Gen. Virol. 84:2305-2315.
[2] Dos Ramos F. et al. (2004). Biochem. Soc. Trans. 32:1081-1083. |
| Comment: | |
| Stem sizes: Loop sizes: |
11 7 3 0 29 |
| Position Paired: | 13404-13414; 13425-13435 13418-13422; 13468-13472 13423-13424; 13465-13466 13436-13440; 13457-13461 13441-13443; 13453-13455 |
| Bracket view of structure: |
13400 13410 13420 13430 13440
# 23456789|123456789|123456789|123456789|123456789|123456789
$ 13392 UUUAAACGGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUA=13449
% 13392 ::::::::::::(((((((((((:::[[[[[[[)))))))))))((((((((::::::
13450 13460 13470
# |123456789|123456789|123
$ 13450 GUACUGAUGUCGUCUACAGGGCUU=13473
% 13450 :::))):))))):::]]:]]]]]: