| PKB-number:
|
PKB218
|
| Definition:
|
ORF1a/ORF1b (polymerase) ribosomal frameshift site
|
| Organism:
|
Porcine reproductive and respiratory syndrome virus, North American isolate (16244B)
|
| Abbreviation:
|
PRRSV-16244B
|
| RNA type:
|
Viral Frameshift
|
| Keywords:
|
arterivirus;
ribosomal frameshifting;
polymerase
|
| EMBL number:
|
AF046869
|
| Submitted by:
|
A.P. Gultyaev
(
gultyaev@rulsfb.LeidenUniv.nl)
|
| Supported by:
|
Sequence comparison
|
| References:
|
[1] Allende R. et al. (1999). J. Gen. Virol. 80:307-315.
|
Stem sizes:
Loop sizes:
|
12 7
4 0 15 |
| Position Paired:
|
7701-7706; 7731-7736
7708-7713; 7725-7730
7718-7724; 7752-7758
|
| Bracket view of structure:
|
7690 7700 7710 7720 7730 7740
# 9|123456789|123456789|123456789|123456789|123456789|12345
$ 7689 UUUAAACUGCUAGCCGCCAGCGGCUUGACCCGCUGUGGUCGCGGCGGCUUGGUUGUU=7745
% 7689 ::::::::::::((((((:((((((::::[[[[[[[)))))))))))):::::::::
7750 7760
# 6789|123456789|
$ 7746 ACUGAGACAGCGGUA=7760
% 7746 ::::::]]]]]]]::
Contact:
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