PSEUDOBASE DATA: PKB383-TSV1

Intro
About PseudoBase	Retrieve by class or by by property		Submit Pseudoknots
		TSV1

PKB-number:	PKB383
Definition:	tRNA-like structure pseudoknot of RNA1
Organism:	Tobacco streak virus
Abbreviation:	TSV1
RNA type:	Viral tRNA-like
Keywords:	Bromoviridae; Ilarvirus
EMBL number:	NC_003844
Submitted by:	A.P. Gultyaev (a.p.goultiaev@liacs.leidenuniv.nl)
Supported by:	Sequence comparison
References:	[1] Olsthoorn R.C.L. et al. (1999). EMBO J. 18:4856-4864. [2] Chen S.C. et al. (2009). In: Feng Z. & Long M. (Eds.) "Viral Genomes: Diversity, Properties and Parameters". Nova Science Publishers, N.Y. (ISBN 978-1-60741-067-6). pp.65-83.
Stem sizes: Loop sizes:	14 5 3 1 42
Position Paired:	3398-3404; 3435-3441 3411-3415; 3430-3434 3417-3418; 3428-3429 3446-3455; 3460-3469 3422-3426; 3484-3488

Bracket view of structure:

       3400      3410      3420      3430      3440      3450
#      789|123456789|123456789|123456789|123456789|123456789|123456
$ 3397 CCGGUGGAUAGGCGGGUGUAGUGCUUCUCCAACACACUUCCACUGAUGCUGUUUAUAUCU=3456
% 3397 :(((((((::::::(((((:((:::[[[[[:))))))))))))))::::((((((((((:

       3460      3470      3480      3490
#      789|123456789|123456789|123456789|1
$ 3457 AAUGAUAUAAACAAUGCCUCCUUUAAAGGAGAUGC=3491
% 3457 :::))))))))))::::::::::::::]]]]]:::